About

The volBrain pipeline has been developed by José V. Manjón (IBIME, UPV, Spain) and Pierrick Coupé (LaBRI UMR 5800, Université de Bordeaux, CNRS, France).

Website design by Elena Carrascosa and Jose E. Romero.

We want to thank for their help:

  • Jussi Tohka
  • Louis Collins
  • Vladimir Fonov
  • Montserrat Robles
  • Simon Eskildsen
  • Sebastian Muehlboeck
  • José Enrique Romero
  • Mallar Chakravarty
  • Rémi Giraud





Publications using volBrain

  1. Christian Hoffmann, Luitpold Distel, Stefan Knippen, Thomas Gryc, Manuel Alexander Schmidt, Rainer Fietkau, Florian Putz. Brain Volume Reduction after Whole-Brain Radiotherapy: Quantification and Prognostic Relevance. Neuro-Oncology, 2017.
  2. Moroso A et al. Microstructural analyses of the posterior cerebellar lobules in relapsing-onset multiple sclerosis and their implication in cognitive impairment. Plos ONE, 2017.
  3. Pierrick Coupe, Gwenaelle Catheline, Enrique Lanuza, José V. Manjón. Towards a unified analysis of brain maturation and aging across the entire lifespan: A MRI analysis. Human Brain Mapping, 2017.
  4. Lee B. Reid, Martin V. Sale, Ross Cunnington, Jason B. Mattingley and Stephen E. Rose. Brain Changes Following Four Weeks of Unimanu al Motor Training: Eviden ce From fMRI-Guided Diffusion MRI Tractography. Human Brain Mapping, 2017.
  5. Sanna Huhtaniska, Erika Jääskeläinen, Tuomas Heikka, Jani S. Moilanen, Heli Lehtiniemi, Jussi Tohka, José V. Manjón, Pierrick Coupe, Lassi Björnholm, Hannu Koponen, Juha Veijola, Matti Isohanni, Vesa Kiviniemi, Graham K. Murray, Jouko Miettunen. Long-term antipsychotic and benzodiazepine use and brain volume changes in schizophrenia: The Northern Finland Birth Cohort 1966 study. Psychiatry Research: Neuroimaging, 2017.
  6. Conti E, Mitra J, Calderoni S, Pannek K, Shen KK, Pagnozzi A, Rose S, Mazzotti S, Scelfo D, Tosetti M, Muratori F, Cioni G, Guzzetta A. Network over-connectivity differentiates autism spectrum disorder from other developmental disorders in toddlers: A diffusion MRI study. Hum Brain Mapping, 2017.
  7. Sørensena L, Igela C, Paia A, Balasa I, Ankerb C, Lillholma M, Nielsena M. Differential diagnosis of mild cognitive impairment and Alzheimer's disease using structural MRI cortical thickness, hippocampal shape, hippocampal texture, and volumetry*. NeuroImage: Clinical, 13:470–482, 2017.
  8. Reid L, Pagnozzia A.M., Fioric S, Boydb R.N., Dowson N, Rose S.E. Measuring neuroplasticity associated with cerebral palsy rehabilitation: An MRI based power analysis. International Journal of Developmental Neuroscience, 58:17–25, 2017.
  9. Tellouck L, Durieux M, Coupé P, Cougnard-Grégoire A, Tellouck J, Tourdias T, Munsch F, Garrigues A, Helmer C, Malet F, Dartigues JF, Dousset V, Delcourt C, Schweitzer C. Optic Radiations Microstructural Changes in Glaucoma and Association With Severity: A Study Using 3Tesla-Magnetic Resonance Diffusion Tensor Imaging. Invest Ophthalmol Vis Sci. 57(15):6539-6547. 2016.
  10. Jeremy Beaumont, Olivier Commowick, Christian Barillot. Multiple Sclerosis lesion segmentation using an automated multimodal Graph Cut. MICCAI 2016, MSSEG challenge proceedings,2016.
  11. Jeremy Beaumont, Olivier Commowick, Christian Barillot. Automatic Multiple Sclerosis lesion segmentation from Intensity-Normalized multi-channel MRI. MICCAI 2016, MSSEG challenge proceedings,2016.
  12. Michel M. Santos, PaulaR.B.Diniz, AbelG.Silva-Filho and Wellington P. Santos. Evaluation-Oriented Training Strategy on MS Segmentation Challenge 2016. MICCAI 2016, MSSEG challenge proceedings,2016.
  13. Sergi Valverde, Mariano Cabezas, Eloy Roura, Sandra Gonzalez-Villa, Joaquim Salvi, Arnau Oliver, and Xavier Llad. Multiple sclerosis lesion detection and segmentation using a convolutional neural network of 3D patches. MICCAI 2016, MSSEG challenge proceedings,2016.
  14. K. Hett, V.-T. Ta, R. Giraud, M. Mondino, J. V. Manjón, P. Coupé. Patch-based DTI grading: Application to Alzheimer's disease classification. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2016. p. 76-83.
  15. Jose E. Romero, Pierrick Coupé, Rémi Giraud, Vinh-Thong Ta, Vladimir Fonov, Min Tae M. Park, M. Mallar Chakravarty, Aristotle N. Voineskos, Jose V. Manjón. CERES: A new cerebellum lobule segmentation method. Neuroimage, 2016.
  16. V. Planche, A. Ruet, P. Coupé, D. Lamargue-Hamel, M. Deloire, B. Pereira, J. V. Manjón, F. Munsch, N. Moscufo, D. S. Meier, C. R.G. Guttmann, V. Dousset, B. Brochet, T. Tourdias. Hippocampal microstructural damage and memory impairment in clinically isolated syndrome suggestive of multiple sclerosis: A diffusion tensor MRI study. Multiple Sclerosis journal, 2016.
  17. E. T. Næss-Schmidt, A. Tietze, J. U. Blichera, M. Petersen, I. K. Mikkelsen, P. Coupé, J. V. Manjón, S. F. Eskildsen. Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification. IJCARS, 2016
  18. Shorena Janelidze et al. CSF Aβ42/Aβ40 and Aβ42/Aβ38 ratios: better diagnostic markers of Alzheimer disease. Annals of Clinical and Translational Neurology, 2016.
  19. William Reginold, Justine Itorralba, Angela Tam, Angela C. Luedke, Juan Fernandez-Ruiz, Jennifer Reginold, Omar Islam, Angeles Garcia. Correlating quantitative tractography at 3T MRI and cognitive tests in healthy older adults. Brain Imaging and Behavior, 1-8, 2015.
  20. Sanna Huhtaniska et al. Long-term antipsychotic use and brain volume changes in Schizophrenia: The Northern Finland birth cohort 1966 study. Euro Global Summit and Medicare Expo on Psychiatry. July 20-22, 2015 Barcelona, Spain.
  21. Jimmy Ghaziri, Alan Tucholka, Gabriel Girard, Jean-Christophe Houde, Guillaume Gilbert, Maxime Descoteaux, Pierre Rainville, Dang Khoa Nguyen. The subcortical structural connectivity of the human insula. Organization for Human Brain Mapping 15, 2015 Honolulu, USA.
  22. Næss-Schmidt, Erhard T., et al. Patch-Based Segmentation from MP2RAGE Images: Comparison to Conventional Techniques. Patch-Based Techniques in Medical Imaging, page: 180-187, LNCS Volume 9467, 2015.
  23. Rodríguez Cruces, R., Velázquez Perez, L., Camacho Tellez, V., Atilano Barbosa, D., González Olvera, E., Santiago Rodríguez, E., Trejo-Martinez, D., Barragan, H., Concha, L. Correlates of cognitive impairments with hippocampal volume and t2 relaxometry in temporal lobe epilepsy. American Epilepsy Society, Pennsylvania Convention Center, Philadelphia, PA, Decembrer 4-8 2015.
  24. Rodríguez Cruces R, Camacho Téllez V, José V. Manjón, Barragán H, Concha L. Análisis Cuantitativo de Esclerosis Hipocampal con Resonancia Magnética en la Epilepsia del Lóbulo temporal. XXXIX Reunión Anual de la Academia Mexicana de NeurologíaAcademia Mexicana de Neurología. Puerto Vallarta Jalisco del 25 al 31 de octubre de 2015.
  25. Raúl Rodríguez Cruces, Vicente Camacho Téllez, Leticia Margarita Velázquez Pérez, David Trejo Martínez, Héctor M. Barragán Campos, Ildefonso Rodríguez Leyva, Luis Concha Loyola. Correlación entre volumen y relaxometría T2 del hipocampo y las alteraciones cognitivas en la epilepsia del lóbulo temporal. XXXVIII Reunion anual del capítulo Mexicano de la Liga Internacional contra la epilepsia., Ciudad de México, México, 29 de julio al 02 de agosto de 2015.


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